PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.5NG100000.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family bHLH
Protein Properties Length: 240aa    MW: 25990.6 Da    PI: 7.1653
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.5NG100000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH39.78.9e-13250455
                         HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                  HLH  4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
                         +h ++Er+RR+++N+ +  Lr+l P +   + k+ + a+i   A+++I++Lq
  Pavir.5NG100000.1.p  2 SHIAVERNRRRQMNDHLKVLRSLTPAL---YIKRGDQASIIGGAIDFIRELQ 50
                         89*************************...9********************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000835.74E-13154No hitNo description
PROSITE profilePS5088814.894149IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.57E-15163IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.6E-13262IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000106.3E-10250IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003537.2E-12455IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 240 aa     Download sequence    Send to blast
MSHIAVERNR RRQMNDHLKV LRSLTPALYI KRGDQASIIG GAIDFIRELQ QVLESLEARK  60
RRRSSTSTSG GGFSPSPTPS PRSHLVAFSS SSGCSAATTS STSSPPVLLP GKALLPAVKE  120
LAACCNSPAA DVEASISGAN VLLRTLSRRA PGQAAGMVAL LEALHLEVLH LNISTMEDTV  180
LHSFVLKIGL ECQLSVEDLA YEVQQTFVCF REQQQQQDQE QQPDHQLPQE NLMYSAMTI*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
15862RKRRR
25863RKRRRS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9698225e-75EU969822.1 Zea mays clone 336092 DNA binding protein mRNA, complete cds.
GenBankKJ7269695e-75KJ726969.1 Zea mays clone pUT3670 bHLH transcription factor (bHLH82) gene, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004968634.11e-117PREDICTED: transcription factor MUTE
SwissprotQ9M8K61e-72MUTE_ARATH; Transcription factor MUTE
TrEMBLK3XR971e-114K3XR97_SETIT; Uncharacterized protein
STRINGSi004438m1e-113(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP111443441
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G06120.11e-57bHLH family protein